Information about the package, dssp, which is shipped with common Linux distributions. The dssp package is designed for, Protein secondary structure assignment.
Package Name:
dssp
Summary:
Protein secondary structure assignment
Description:
The DSSP program standardizes protein secondary structure assignment. DSSP is a database of secondary structure assignments (and much more) for all protein entries in the Protein Data Bank (PDB). DSSP is also the program that calculates DSSP entries from PDB entries. DSSP does not predict secondary structure. References: "A series of PDB related databases for everyday needs.", Robbie P. Joosten, Tim A.H. te Beek, Elmar Krieger, Maarten L. Hekkelman, Rob W.W. Hooft, Reinhard Schneider, Chris Sander, and Gert Vriend. Nucleic Acids Research 2011 January; 39(Database issue): D411-D419. doi: 10.1093/nar/gkq1105 "Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.", Kabsch W, Sander C, Biopolymers. 1983 22 2577-2637.
Architecture:
x86_64
Version:
2.2.1
Release:
6.el6
Size:
175 k
Repository:
epel
From Repository:
Licence:
Boost
Control the dssp package with the following handy commands outlined below.
yum install dssp
This command will install dssp on the server.
yum remove dssp
This command will un-install dssp on the server. When you run this command, you will be asked if you are sure that you want to remove dssp, so you have to manually confirm that you want to do this.
yum -y remove dssp
This command will un-install dssp on the server. When you run this command with th e -y flag, you will not be prompted to check that you are sure you want to remove the package - so be sure you absolutely want to remove dssp when using the -y flag.
yum update dssp
This command will update dssp to the latest version. When you run this command, you will be asked if you are sure that you want to remove dssp, so you have to manually confirm that you want to do this.
yum -y update dssp
This command will update dssp to the latest version. When you run this command with the -y flag, you will not be prompted to check that you are sure you want to remove the package - so be sure you absolutely want to remove dssp when using the -y flag.
yum info dssp
This command will show you core information about the dssp package.
yum deplist dssp
This command will show you the dependencies for dssp. Thankfully, when using Yum, if dependencies are required, these are also installed at the same time so you don't have to worry too much about that.
yum check-update dssp
This command will check if there is an update waiting on dssp. When you run this command this will return nothing if there is nothing to update, or, will return the package name if the package is due to be updated.