Information about the package, mmseq, which is shipped with common Linux distributions. The mmseq package is designed for, Haplotype and isoform specific expression estimation for RNA-seq.
Package Name:
mmseq
Summary:
Haplotype and isoform specific expression estimation for RNA-seq
Description:
Software for fast, scalable haplotype and isoform expression estimation using multi-mapping RNA-seq reads. Example scripts are included.
Architecture:
x86_64
Version:
0.9.18
Release:
1.el6
Size:
125 k
Repository:
epel
From Repository:
Licence:
GPLv2+
Control the mmseq package with the following handy commands outlined below.
yum install mmseq
This command will install mmseq on the server.
yum remove mmseq
This command will un-install mmseq on the server. When you run this command, you will be asked if you are sure that you want to remove mmseq, so you have to manually confirm that you want to do this.
yum -y remove mmseq
This command will un-install mmseq on the server. When you run this command with th e -y flag, you will not be prompted to check that you are sure you want to remove the package - so be sure you absolutely want to remove mmseq when using the -y flag.
yum update mmseq
This command will update mmseq to the latest version. When you run this command, you will be asked if you are sure that you want to remove mmseq, so you have to manually confirm that you want to do this.
yum -y update mmseq
This command will update mmseq to the latest version. When you run this command with the -y flag, you will not be prompted to check that you are sure you want to remove the package - so be sure you absolutely want to remove mmseq when using the -y flag.
yum info mmseq
This command will show you core information about the mmseq package.
yum deplist mmseq
This command will show you the dependencies for mmseq. Thankfully, when using Yum, if dependencies are required, these are also installed at the same time so you don't have to worry too much about that.
yum check-update mmseq
This command will check if there is an update waiting on mmseq. When you run this command this will return nothing if there is nothing to update, or, will return the package name if the package is due to be updated.