Information about the package, ssm, which is shipped with common Linux distributions. The ssm package is designed for, Macromolecular coordinate superposition library.
Package Name:
ssm
Summary:
Macromolecular coordinate superposition library
Description:
SSM is a macromolecular coordinate superposition library, written by Eugene Krissinel. The library implements the SSM algorithm of protein structure comparison in three dimensions, which includes an original procedure of matching graphs built on the protein's secondary-structure elements, followed by an iterative three-dimensional alignment of protein backbone Calpha atoms. The algorithm implemented by the software is described in: E. Krissinel & K. Henrick (2004) Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr D Biol Crystallogr. 60, 2256-68. This package contains the shared library components needed for programs that have been compiled with the ssm library.
Architecture:
x86_64
Version:
1.0
Release:
2.el6
Size:
74 k
Repository:
epel
From Repository:
Licence:
LGPLv2+
Control the ssm package with the following handy commands outlined below.
yum install ssm
This command will install ssm on the server.
yum remove ssm
This command will un-install ssm on the server. When you run this command, you will be asked if you are sure that you want to remove ssm, so you have to manually confirm that you want to do this.
yum -y remove ssm
This command will un-install ssm on the server. When you run this command with th e -y flag, you will not be prompted to check that you are sure you want to remove the package - so be sure you absolutely want to remove ssm when using the -y flag.
yum update ssm
This command will update ssm to the latest version. When you run this command, you will be asked if you are sure that you want to remove ssm, so you have to manually confirm that you want to do this.
yum -y update ssm
This command will update ssm to the latest version. When you run this command with the -y flag, you will not be prompted to check that you are sure you want to remove the package - so be sure you absolutely want to remove ssm when using the -y flag.
yum info ssm
This command will show you core information about the ssm package.
yum deplist ssm
This command will show you the dependencies for ssm. Thankfully, when using Yum, if dependencies are required, these are also installed at the same time so you don't have to worry too much about that.
yum check-update ssm
This command will check if there is an update waiting on ssm. When you run this command this will return nothing if there is nothing to update, or, will return the package name if the package is due to be updated.